Publications

Pujos, F; Hautier, L; Antoine, P-O; Boivin, M; Moison, B; Salas-Gismondi, R; Tejada-Lara, JV; Varas-Malca, RM; Yans, J; Marivaux, L. 2025. 3D models related to the publication: Unexpected pampatheriid from the early Oligocene of Peruvian Amazonia: insights into the tropical differentiation of cingulate xenarthrans. MorphoMuseuM: sous presse.

Rainey, PB; Hochberg, ME. 2025. Could humans and AI become a new evolutionary individual?. Proceedings of the National Academy of Sciences USA 122(37): e2509122122.

Ralairison Ralien, P; Corson, MS; Roucaute, M; Menniti, C; Kabir, KA; Aubin, J; Nahon, S. 2025. Influence of divided ponds on fish diets in polyculture: insights from carbon and nitrogen stable isotopes in trophic webs. Aquaculture, Fish and Fisheries 6(1): e70161.

Ramírez, D; Anaya-Romero, M; Rodríguez, ME; Arias-Pérez, A; Mukiibi, R; D'Cotta, H; Robledo, D; Rebordinos, L. 2025. Insights into Solea senegalensis Reproduction Through Gonadal Tissue Methylation Analysis and Transcriptomic Integration. BIOMOLECULES. 15.

Raynaud, M; Sanna, P; Joseph, J; Clément, JAJ; Imai, Y; Lareyre, J-J; Laurent, A; Galtier, N; Baudat, F; Duret, L; Gagnaire, P-A; de Massy, B. 2025. PRDM9 drives the location and rapid evolution of recombination hotspots in salmonids fish. PLoS Biology 23(1): e3002950.

Renoult, JP; Karpinski, R; Sauvadet, L; Kreyer, M; Mbadoumou, R; Roura-Torres, B; Baniel, A; Charpentier, MJE. 2025. Vision transformers for age prediction from facial images in a wild primate. Methods in Ecology and Evolution 16(12): 2858-2872.

Revill-Hivet, E; Mallil-Messara, K; Justy, F; Cerqueira, F; Desmarais, E; Amroun, M; Gaubert, P. 2025. Pioneering DNA metabarcoding analysis of the African wolf Canis lupaster diet. Mammalian Biology: 1-19.

Rey, O; Dissard, D; Toulza, E; Guinebert, T; Saccas, M; Allienne, J-F; Butsher, J; BenSalah Zoubir, M; Iwankow, G; Tougard, C; Vidal-Dupiol, J. 2025. Reconstructing the dynamics of past coral endosymbiotic algae communities using coral ancient DNA coraDNA). Coral Reefs 44: 529–539.

Riffis, M; Saclier, N; Galtier, N. 2025. Compensatory evolution following deleterious episodes of GC-biased gene conversion in rodents. Molecular Biology and Evolution 42(7): msaf168.

Roatti, V; Delaunay, A; Cowlishaw, G; Huchard, E; Carter, A. 2025. Growing up wild: social learning during foraging in immature baboons. Animal Behaviour: accepté.

Robles, M; Andrieu, V; Rochette, P; Fauquette, S; Peyron, O; Demory, F; Parlak, O; Charrat, E; Gambin, B; Alçiçek, MC. 2025. Vegetation and climate changes during the Early-Late Pliocene Transition (~ 3.6 Ma) in the Burdur Basin (Southwestern Anatolia): a comparison with the Mediterranean. Climate of the Past 21(11): 2299-2329.

Romieu, J; Camarata, G; Crochet, P-A; de Navascués, M; Leblois, R; Rousset, F. 2025. Performance evaluation of adaptive introgression classification methods. Peer Community Journal 5: e95.

Roshal, DS; Lebrun, R; Fedorenko, K; Golushko, I; Rochal, SB; Baghdiguian, S. 2025. Multiscale biological systems converge toward universal topology. Physical Review Research 7(3): 033151.

Roura-Torres, B; Baniel, A; Cryer, A; Sauvadet, L; De Pastors, M; Havill, G; Kreyer, M; Meric de Bellefon, J; Abaga, S; Harté, M; Kappeler, PM; Charpentier, MJE. 2025. Toward independence: maternal social status and experience shape mother–infant relationships in mandrills. Behavioral Ecology and Sociobiology 79(3): 42.

Rué, O; Fuandila, NN; Hammoumi, S; Gaspin, C; Avarre, J-C. 2025. Micro-RNA expression data from common carp brain cells infected by Cyvirus cyprinidallo3 at permissive and non-permissive temperatures. Data in Brief 61: 111800.

Ruelas, D; Fabre, P-H; Pacheco, V; Martinez, Q. 2025. Introduction to the Thomasomys (Rodentia: Cricetidae) turbinal adaptations: insights into elevational and environmental challenges: Introducción a las adaptaciones de los huesos turbinados de Thomasomys (Rodentia: Cricetidae): perspectivas sobre los desaf. Journal of Mammalogy: gyaf061.

Ryzhkova, N; Asselin, H; Ali, AA; Kryshen, A; Bergeron, Y; Robles, D; Pineda-Zapata, S; Drobyshev, I. 2025. PDO Dynamics Shape the Fire Regime of Boreal Subarctic Landscapes in the Northwest Territories, Canada. JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES. 130.

Saclier, N; Stoch, F; Eme, D; Issartel, C; Konecny-Dupré, L; Douady, CJ; Malard, F. 2025. New Insights Into the Composition, Distribution and History of the Freshwater Isopod Species Complex Proasellus coxalis (Dollfus, 1892) in Europe and the Mediterranean Basin. Freshwater Biology 70(6): e70062.

Sadier, A; Rudolf, AM; Muratani, M. 2025. Evolution in space: experimental pathways to understanding life’s adaptability beyond Earth. Interface Focus 15(6): 20250026.

Sahakyan, L; Colombié , C; Sukiasyan, A; Hambaryan, L; Grigoryan, T; Haberzettl, T; Kasper, T; Stepanyan, Z; Mkrtchyan, S; Hovakimyan, H; Joannin, S; Avagyan, A. 2025. Holocene freshwater microbialites of Lake Sevan (Armenia). JOURNAL OF GREAT LAKES RESEARCH. 51.

Salazar, M; Caballero-Huertas, M; van Gelderen, TA; Krabbe, MN; Gut, M; Heath, S; Esteve, A; Ribas, L. 2025. Sexual dimorphism in the DNA methylation pattern after immune stimulation in the zebrafish (Danio rerio) gonads. Frontiers in Cell and Developmental Biology 13: 1720219.

Sanabria-fernández, JA; Baselga, A; Lazzari, N; Gómez-rodríguez, C; Mouillot, D; Edgar, G; Dakos, V. 2025. Thriving Areas in Temperate Coastal Systems: Novel Insights for Marine Conservation. Diversity and Distributions 31: e70091.

Saroff, MJ; Haile, AA; Baniel, A; Kraberger, S; Regney, M; Harrach, B; Kaján, GL; Lu, A; Beehner, JC; Bergman, TJ; Snyder-Mackler, N; Varsani, A; Schneider-Crease, IA. 2025. Early-life infection dynamics and genomic diversity of adenoviruses in a wild primate (Theropithecus gelada). Microbial Genomics 11(12): 001595.

Scarsbrook, L; Cairns, KM; Mitchell, KJ; Bougiouri, K; Evin, A; Harris, AC; Wood, AE; Zhang, Z; Lawson, DJ; Alves, JM; Ditchfield, PW; Granja-Martins, S; Styring, AK; Tabadda, K; Thalmann, O; Croxther, MS; Curry, M; Feuerborn, TR; Koungoulos, LG; Letnic, M; Reed, EH; Sabin, R; Parker, HG; Ostrander, EA; Frantz, LAF; Larson, G; Fillios, MA. 2025. The impacts of European arrival on Australian dingoes. Proceedings of the National Academy of Sciences USA 122(48): e2421749122.

Schindler, M; Feregrino, C; Aldrovandi, S; Lo, B-W; Monaco, AA; Ringel, AR; Morales, AE; Zehnder, T; Behncke, RY; Glaser, J; Barclay, A; Andrey, G; Kragesteen, BK; Hägerling, R; Haas, SA; Vingron, M; Ulitsky, I; Marti-Renom, MA; Hechavarria, J; Fasel, N; Hiller, M; Lupiáñez, DG; Mundlos, S; Real, FM. 2025. Comparative single-cell analyses reveal evolutionary repurposing of a conserved gene programme in bat wing development. Nature Ecology & Evolution 9(9): 1626-1642.

Schneider-Crease, IA; Moya, IL; Chiou, KL; Baniel, A; Haile, AA; Kebede, F; Abebe, B; Lu, A; Bergman, TJ; Snyder-Mackler, N; Varsani, A. 2025. Intestivirid Acquisition Increases Across Infancy in a Wild Primate Population. Molecular Ecology 34: e17801.

Senf, C; Esquivel-Muelbert, A; Pugh, TAM; Anderegg, WRL; Anderson-Teixeira, KJ; Arellano, G; Beloiu Schwenke, M; Bentz, BJ; Boehmer, HJ; Bond-Lamberty, B; Bordin, KM; Brearley, FQ; Bussotti, F; Cailleret, M; Camarero, JJ; Chirici, G; Costa, FRC; Dalagnol, R; Davi, H; Davies, SJ; Delzon, S; Prasad Dhakal, B; Ferreira de Lima, RA; Ferretti, M; Fontaine, JB; Garbarino, M; Luis de Gasper, A; Gessler, A; Gilbert, G; Godlee, J; Maiato Pedro Gonçalves, F; Govaere, L; Gutiérrez, AG; Cardozo, EG; Hammond, W; Hartmann, H; Hobi, M; Andres, H; Homeier, J; Mark, H; Cho-Ying, H; Hérault, B; Jackson, T; Jucker, T; Jump, A; Junttila, S; Kattenborn, T; Klipel, J; Kotowska, MM; Král, K; Portal, N; L., L-T; López-Camacho, R; Maeda, EE; Jesus, D; Martin, EH; Martínez-vilalta, J; Mcdowell, N; Peter, M; Mori, AS; Mohd Afzanizam, M; Mund, J-P; Muscarella, R; Mendez-Toribio, M; Mueller, S; Nagel, TA; Stefan, N; Nock, CA; Nsanyi Sainge, M; O'Brien, M; Penuelas, J; Perry, GLW; Phillips, OL; Posada, JM; Ribeiro Rodrigues, R; Anamaria, R; Xavier-Rousseau, G; Ruehr, NK; Ruiz-Benito, P; Ruthrof, KX; Salas-Eljatib, C; Sanders, T; Rodrigo Scarton, B; Scharnweber, T; Schelhaas, MJ; Schuldt, B; Schwarz, S; Seidl, R; Shorohova, E; da Silva, AC; Geert, S; Socha, J; Stereńczak, K; Stillhard, J; Stojanovic, DB; Suvanto, S; Svoboda, M; Sánchez-Pinillos, M; Tanentzap, AJ; Taylor, A; Turini, FF; Vacchiano, G; Vibrans, AC; Vilagrosa, AA; Vilanova, E; Waser, LT; Wiser, SK; Yu, K; Zavala, M; Laio Zimermannlaio, O; Zuleta, D; de Castro-Faria, AB; van der Maaten, E; van der Maaten-Theunissen, M. 2025. Towards a global understanding of tree mortality. New Phytologist 245(6): 2377-2392.

Sharlaimova, NS; Petukhova, OA; Lomert, EV; Bazhanova, ED; Krasnov, KA; Godefroy, N; Khalaman, VV. 2025. Cytotoxic Effect of a Crude Extract of Halichondria panicea (Porifera: Demospongiae) from the White Sea on Mouse 3T3 Balb Cells. Russian Journal of Marine Biology 51(5): 275-289.

Shaw, AK; Fouda, L; Mezzini, S; Kim, D; Chatterjee, N; Wolfson, D; Abrahms, B; Attias, N; Beardsworth, CE; Beltran, RS; Binning, SA; Blincow, KM; Chan, YC; Fronhofer, EA; Hegemann, A; Hurme, ER; Iannarilli, F; Kellner, JB; McCoy, KD; Rafiq, K; Saastamoinen, M; Sequeira, AMM; Serota, MW; Sumasgutner, P; Tao, Y; Torstenson, M; Yanco, SW; Beck, KB; Bertram, MG; Beumer, LT; Bradaric, M; Clermont, J; Ellis-Soto, D; Faltusova, M; Fieberg, J; Hall, RJ; Kölzsch, A; Lai, SD; Lee-Cruz, L; Loretto, MC; Loveridge, A; Michelangeli, M; Müller, T; Riotte-Lambert, L; Sapir, N; Scacco, M; Teitelbaum, CS; Cagnacci, F. 2025. Perceived and observed biases within scientific communities: a case study in movement ecology. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES. 292.

Siguendibo Sambou, B; Adama Diaw, A; Adnet, S. 2025. A new Miocene–Pliocene fish association from the lateritic sands of Senegal confirms the marine origin of the so-called ‘Continental Terminal’ Formation in the Thies area. Palaeoworld: 200953.